summaryrefslogtreecommitdiff
path: root/s2-dump-missing-paper-ids.py
diff options
context:
space:
mode:
authorJules Laplace <julescarbon@gmail.com>2018-11-25 22:19:15 +0100
committerJules Laplace <julescarbon@gmail.com>2018-11-25 22:19:15 +0100
commitee3d0d98e19f1d8177d85af1866fd0ee431fe9ea (patch)
tree41372528e78d4328bc2a47bbbabac7e809c58894 /s2-dump-missing-paper-ids.py
parent255b8178af1e25a71fd23703d30c0d1f74911f47 (diff)
moving stuff
Diffstat (limited to 's2-dump-missing-paper-ids.py')
-rw-r--r--s2-dump-missing-paper-ids.py40
1 files changed, 0 insertions, 40 deletions
diff --git a/s2-dump-missing-paper-ids.py b/s2-dump-missing-paper-ids.py
deleted file mode 100644
index bf0b7e50..00000000
--- a/s2-dump-missing-paper-ids.py
+++ /dev/null
@@ -1,40 +0,0 @@
-import os
-import gzip
-import glob
-import click
-from util import *
-
-DB_PAPER_DIR = './datasets/s2/db_papers'
-RAW_PAPER_DIR = './datasets/s2/raw_papers'
-
-@click.command()
-@click.option('--fn', '-f', default='ids.json', help='List of IDs to extract from the big dataset.')
-def fetch_missing_entries(fn):
- missing_ids = load_missing_ids(fn)
- write_csv('./missing.csv', keys=None, rows=[[id] for id in missing_ids])
-
-def load_missing_ids(fn):
- lookup = {}
- missing_lookup = {}
- ids = read_json(fn)
- found_count = 0
- missing_count = 0
- for paper_id in ids:
- db_paper_path = make_db_paper_path(paper_id)
- raw_paper_path = make_raw_paper_path(paper_id)
- if os.path.exists(db_paper_path) or os.path.exists(raw_paper_path):
- lookup[paper_id] = True
- found_count += 1
- else:
- missing_lookup[paper_id] = True
- missing_count += 1
- print("{} papers found, {} must be fetched".format(found_count, missing_count))
- return missing_lookup.keys()
-
-def make_db_paper_path(paper_id):
- return '{}/{}/{}'.format(DB_PAPER_DIR, paper_id[0:2], paper_id)
-def make_raw_paper_path(paper_id):
- return '{}/{}/{}'.format(RAW_PAPER_DIR, paper_id[0:2], paper_id)
-
-if __name__ == '__main__':
- fetch_missing_entries()