api stuff is ... there

7 files changed, 614 insertions, 202 deletions

diff --git a/app/server/bridge.js b/app/server/bridge.js
index 6168580..9405dad 100644
--- a/app/server/bridge.js
+++ b/app/server/bridge.js
@@ -1,7 +1,5 @@
-import { server } from './site'
-import socket_io from 'socket.io'
+import { server, io } from './site'
 
-const io = socket_io(server)
 let relay_connected = false
 
 export const client = io.of('/client')
diff --git a/app/server/db/models.js b/app/server/db/models.js
index 2108148..1ca87d0 100644
--- a/app/server/db/models.js
+++ b/app/server/db/models.js
@@ -1,8 +1,6 @@
 
-let fs = require('fs')
 let model = require('./model')
 let bookshelf = require("./bookshelf").bookshelf
-import bridge from '../bridge'
 
 let Folder = bookshelf.Model.extend({
   tableName: 'folders',
@@ -25,29 +23,24 @@ module.exports = {
   folder: model('folder', Folder, {
     fields: "name username description".split(" "),
     afterCreate: (folder) => {
-      fs.mkdir('data/' + folder.get('id') + '/', function(){
-        console.log('created folder', folder.get('id'), folder.get('name'))
-      })
+      console.log('created folder', folder.get('id'), folder.get('name'))
     }
   }),
   file: model('file', File, {
     fields: "folder_id username name mime type duration analysis size processed generated".split(" "),
     afterCreate: (file) => {
-      bridge.processFiles()
+      console.log('created file')
+      // bridge.processFiles()
     }
   }),
   job: model('job', Job, {
     fields: "name username completed tool".split(" "),
   }),
   task: model('task', Task, {
-    fields: "job_id username completed processing tool content_file_id style_file_id output_file_id alpha iterations stdout stderr".split(" "),
+    fields: "job_id username completed processing tool alpha iterations stdout stderr".split(" "),
     afterCreate: (task) => {
-      bridge.processTasks()
-    },
-    hasOne: {
-      content_file: File,
-      style_file: File,
-      output_file: File,
+      console.log('created task')
+      // bridge.processTasks()
     }
   }),
 }
diff --git a/app/server/index.js b/app/server/index.js
index e4bafb0..1bfd9a4 100644
--- a/app/server/index.js
+++ b/app/server/index.js
@@ -1,2 +1,6 @@
-import * as site from './site'
+import { server, app } from './site'
 import * as bridge from './bridge'
+
+server.listen(process.env.EXPRESS_PORT, () => {
+  console.log('Cortex remote listening on http://localhost:' + server.address().port)
+})
diff --git a/app/server/site.js b/app/server/site.js
index 44c4508..160c7b6 100644
--- a/app/server/site.js
+++ b/app/server/site.js
@@ -1,34 +1,31 @@
-require('dotenv').config()
 const express = require('express')
 const http = require('http')
 const path = require('path')
-const api = require('./util/api')
 const multer = require('multer')()
 const upload = require('./util/upload')
 const bodyParser = require('body-parser')
 // const multer = require('multer')
 // const upload = multer({ dest: 'uploads/' })
 
-export const app = express()
+export const app = new express()
 export const server = http.createServer(app)
-server.listen(process.env.EXPRESS_PORT, () => {
-  console.log('Cortex remote listening on http://localhost:' + server.address().port)
-})
 
 app.disable('x-powered-by')
 app.use(bodyParser.json())
 app.use(bodyParser.urlencoded({ extended: false }))
 app.use(express.query())
-app.use(express.static())
-app.use(express.static(path.join(__dirname, '../public'), { extensions: ['html'] }))
+app.use(express.static(path.join(__dirname, '../../public')))
 
-upload.init()
+export const io = require('socket.io').listen(server)
+console.log(io)
+import { api } from './util/api'
 
 const api_folders = api(app, 'folder')
 const api_files = api(app, 'file')
 const api_jobs = api(app, 'job')
 const api_tasks = api(app, 'task')
 
+upload.init()
 // app.use('/upload', require('./upload'))
 
 app.post('/folders/:id',
@@ -88,7 +85,9 @@ app.post('/folders/:id',
     })
   })
 
-app.get('/:module/:mode/', serve_index)
-app.get('/', serve_index)
+// require('./bridge')
 
 function serve_index(req, res) { res.sendFile(path.join(__dirname, '../../public', 'index.html')) }
+
+// app.get('/:module/:mode/', serve_index)
+app.get('/', serve_index)
diff --git a/app/server/util/upload.js b/app/server/util/upload.js
index 9e15748..0f71196 100644
--- a/app/server/util/upload.js
+++ b/app/server/util/upload.js
@@ -1,12 +1,10 @@
+// called... twice?
+require('dotenv').config()
 
 var knox = require('knox')
 var uuid = require('uuid/v1')
 
-var s3 = knox.createClient({
-  key: process.env.S3_KEY,
-  secret: process.env.S3_SECRET,
-  bucket: process.env.S3_BUCKET,
-})
+var s3;
 
 var acceptableuploadTypes = {
   'image/gif': 'gif',
@@ -17,6 +15,14 @@ var acceptableuploadTypes = {
 
 module.exports = {}
 
+module.exports.init = function(){
+  s3 = knox.createClient({
+    key: process.env.S3_KEY,
+    secret: process.env.S3_SECRET,
+    bucket: process.env.S3_BUCKET,
+  })
+}
+
 module.exports.client = function(){
   return s3
 }
diff --git a/package-lock.json b/package-lock.json
index 415b4a2..e9fe76b 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -349,14 +349,12 @@
     "arr-flatten": {
       "version": "1.1.0",
       "resolved": "https://registry.npmjs.org/arr-flatten/-/arr-flatten-1.1.0.tgz",
-      "integrity": "sha512-L3hKV5R/p5o81R7O02IGnwpDmkp6E982XhtbuwSe3O4qOtMMMtodicASA1Cny2U+aCXcNpml+m4dPsvsJ3jatg==",
-      "dev": true
+      "integrity": "sha512-L3hKV5R/p5o81R7O02IGnwpDmkp6E982XhtbuwSe3O4qOtMMMtodicASA1Cny2U+aCXcNpml+m4dPsvsJ3jatg=="
     },
     "arr-union": {
       "version": "3.1.0",
       "resolved": "https://registry.npmjs.org/arr-union/-/arr-union-3.1.0.tgz",
-      "integrity": "sha1-45sJrqne+Gao8gbiiK9jkZuuOcQ=",
-      "dev": true
+      "integrity": "sha1-45sJrqne+Gao8gbiiK9jkZuuOcQ="
     },
     "array-differ": {
       "version": "1.0.0",
@@ -364,11 +362,21 @@
       "integrity": "sha1-7/UuN1gknTO+QCuLuOVkuytdQDE=",
       "dev": true
     },
+    "array-each": {
+      "version": "1.0.1",
+      "resolved": "https://registry.npmjs.org/array-each/-/array-each-1.0.1.tgz",
+      "integrity": "sha1-p5SvDAWrF1KEbudTofIRoFugxE8="
+    },
     "array-flatten": {
       "version": "1.1.1",
       "resolved": "https://registry.npmjs.org/array-flatten/-/array-flatten-1.1.1.tgz",
       "integrity": "sha1-ml9pkFGx5wczKPKgCJaLZOopVdI="
     },
+    "array-slice": {
+      "version": "1.1.0",
+      "resolved": "https://registry.npmjs.org/array-slice/-/array-slice-1.1.0.tgz",
+      "integrity": "sha512-B1qMD3RBP7O8o0H2KbrXDyB0IccejMF15+87Lvlor12ONPRHP6gTjXMNkt/d3ZuOGbAe66hFmaCfECI24Ufp6w=="
+    },
     "array-union": {
       "version": "1.0.2",
       "resolved": "https://registry.npmjs.org/array-union/-/array-union-1.0.2.tgz",
@@ -429,8 +437,7 @@
     "assign-symbols": {
       "version": "1.0.0",
       "resolved": "https://registry.npmjs.org/assign-symbols/-/assign-symbols-1.0.0.tgz",
-      "integrity": "sha1-WWZ/QfrdTyDMvCu5a41Pf3jsA2c=",
-      "dev": true
+      "integrity": "sha1-WWZ/QfrdTyDMvCu5a41Pf3jsA2c="
     },
     "ast-types": {
       "version": "0.11.3",
@@ -458,8 +465,7 @@
     "atob": {
       "version": "2.1.1",
       "resolved": "https://registry.npmjs.org/atob/-/atob-2.1.1.tgz",
-      "integrity": "sha1-ri1acpR38onWDdf5amMUoi3Wwio=",
-      "dev": true
+      "integrity": "sha1-ri1acpR38onWDdf5amMUoi3Wwio="
     },
     "babel-cli": {
       "version": "6.26.0",
@@ -1449,7 +1455,6 @@
       "version": "0.11.2",
       "resolved": "https://registry.npmjs.org/base/-/base-0.11.2.tgz",
       "integrity": "sha512-5T6P4xPgpp0YDFvSWwEZ4NoE3aM4QBQXDzmVbraCkFj8zHM+mba8SyqB5DbZWyR7mYHo6Y7BdQo3MoA4m0TeQg==",
-      "dev": true,
       "requires": {
         "cache-base": "^1.0.1",
         "class-utils": "^0.3.5",
@@ -1464,7 +1469,6 @@
           "version": "1.0.0",
           "resolved": "https://registry.npmjs.org/define-property/-/define-property-1.0.0.tgz",
           "integrity": "sha1-dp66rz9KY6rTr56NMEybvnm/sOY=",
-          "dev": true,
           "requires": {
             "is-descriptor": "^1.0.0"
           }
@@ -1473,7 +1477,6 @@
           "version": "1.0.0",
           "resolved": "https://registry.npmjs.org/is-accessor-descriptor/-/is-accessor-descriptor-1.0.0.tgz",
           "integrity": "sha512-m5hnHTkcVsPfqx3AKlyttIPb7J+XykHvJP2B9bZDjlhLIoEq4XoK64Vg7boZlVWYK6LUY94dYPEE7Lh0ZkZKcQ==",
-          "dev": true,
           "requires": {
             "kind-of": "^6.0.0"
           }
@@ -1482,7 +1485,6 @@
           "version": "1.0.0",
           "resolved": "https://registry.npmjs.org/is-data-descriptor/-/is-data-descriptor-1.0.0.tgz",
           "integrity": "sha512-jbRXy1FmtAoCjQkVmIVYwuuqDFUbaOeDjmed1tOGPrsMhtJA4rD9tkgA0F1qJ3gRFRXcHYVkdeaP50Q5rE/jLQ==",
-          "dev": true,
           "requires": {
             "kind-of": "^6.0.0"
           }
@@ -1491,7 +1493,6 @@
           "version": "1.0.2",
           "resolved": "https://registry.npmjs.org/is-descriptor/-/is-descriptor-1.0.2.tgz",
           "integrity": "sha512-2eis5WqQGV7peooDyLmNEPUrps9+SXX5c9pL3xEB+4e9HnGuDa7mB7kHxHw4CbqS9k1T2hOH3miL8n8WtiYVtg==",
-          "dev": true,
           "requires": {
             "is-accessor-descriptor": "^1.0.0",
             "is-data-descriptor": "^1.0.0",
@@ -1501,14 +1502,12 @@
         "isobject": {
           "version": "3.0.1",
           "resolved": "https://registry.npmjs.org/isobject/-/isobject-3.0.1.tgz",
-          "integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8=",
-          "dev": true
+          "integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8="
         },
         "kind-of": {
           "version": "6.0.2",
           "resolved": "https://registry.npmjs.org/kind-of/-/kind-of-6.0.2.tgz",
-          "integrity": "sha512-s5kLOcnH0XqDO+FvuaLX8DDjZ18CGFk7VygH40QoKPUQhW4e2rvM0rwUq0t8IQDOwYSeLK01U90OjzBTme2QqA==",
-          "dev": true
+          "integrity": "sha512-s5kLOcnH0XqDO+FvuaLX8DDjZ18CGFk7VygH40QoKPUQhW4e2rvM0rwUq0t8IQDOwYSeLK01U90OjzBTme2QqA=="
         }
       }
     },
@@ -1861,7 +1860,6 @@
       "version": "1.0.1",
       "resolved": "https://registry.npmjs.org/cache-base/-/cache-base-1.0.1.tgz",
       "integrity": "sha512-AKcdTnFSWATd5/GCPRxr2ChwIJ85CeyrEyjRHlKxQ56d4XJMGym0uAiKn0xbLOGOl3+yRpOTi484dVCEc5AUzQ==",
-      "dev": true,
       "requires": {
         "collection-visit": "^1.0.0",
         "component-emitter": "^1.2.1",
@@ -1877,8 +1875,7 @@
         "isobject": {
           "version": "3.0.1",
           "resolved": "https://registry.npmjs.org/isobject/-/isobject-3.0.1.tgz",
-          "integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8=",
-          "dev": true
+          "integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8="
         }
       }
     },
@@ -2000,7 +1997,6 @@
       "version": "0.3.6",
       "resolved": "https://registry.npmjs.org/class-utils/-/class-utils-0.3.6.tgz",
       "integrity": "sha512-qOhPa/Fj7s6TY8H8esGu5QNpMMQxz79h+urzrNYN6mn+9BnxlDGf5QZ+XeCDsxSjPqsSR56XOZOJmpeurnLMeg==",
-      "dev": true,
       "requires": {
         "arr-union": "^3.1.0",
         "define-property": "^0.2.5",
@@ -2012,7 +2008,6 @@
           "version": "0.2.5",
           "resolved": "https://registry.npmjs.org/define-property/-/define-property-0.2.5.tgz",
           "integrity": "sha1-w1se+RjsPJkPmlvFe+BKrOxcgRY=",
-          "dev": true,
           "requires": {
             "is-descriptor": "^0.1.0"
           }
@@ -2020,8 +2015,7 @@
         "isobject": {
           "version": "3.0.1",
           "resolved": "https://registry.npmjs.org/isobject/-/isobject-3.0.1.tgz",
-          "integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8=",
-          "dev": true
+          "integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8="
         }
       }
     },
@@ -2171,7 +2165,6 @@
       "version": "1.0.0",
       "resolved": "https://registry.npmjs.org/collection-visit/-/collection-visit-1.0.0.tgz",
       "integrity": "sha1-S8A3PBZLwykbTTaMgpzxqApZ3KA=",
-      "dev": true,
       "requires": {
         "map-visit": "^1.0.0",
         "object-visit": "^1.0.0"
@@ -2199,8 +2192,7 @@
     "commander": {
       "version": "2.15.1",
       "resolved": "https://registry.npmjs.org/commander/-/commander-2.15.1.tgz",
-      "integrity": "sha512-VlfT9F3V0v+jr4yxPc5gg9s62/fIVWsd2Bk2iD435um1NlGMYdVCq+MjcXnhYq2icNOizHr1kK+5TI6H0Hy0ag==",
-      "dev": true
+      "integrity": "sha512-VlfT9F3V0v+jr4yxPc5gg9s62/fIVWsd2Bk2iD435um1NlGMYdVCq+MjcXnhYq2icNOizHr1kK+5TI6H0Hy0ag=="
     },
     "commondir": {
       "version": "1.0.1",
@@ -2307,8 +2299,7 @@
     "copy-descriptor": {
       "version": "0.1.1",
       "resolved": "https://registry.npmjs.org/copy-descriptor/-/copy-descriptor-0.1.1.tgz",
-      "integrity": "sha1-Z29us8OZl8LuGsOpJP1hJHSPV40=",
-      "dev": true
+      "integrity": "sha1-Z29us8OZl8LuGsOpJP1hJHSPV40="
     },
     "core-js": {
       "version": "1.2.7",
@@ -2441,8 +2432,7 @@
     "decode-uri-component": {
       "version": "0.2.0",
       "resolved": "https://registry.npmjs.org/decode-uri-component/-/decode-uri-component-0.2.0.tgz",
-      "integrity": "sha1-6zkTMzRYd1y4TNGh+uBiEGu4dUU=",
-      "dev": true
+      "integrity": "sha1-6zkTMzRYd1y4TNGh+uBiEGu4dUU="
     },
     "decompress-response": {
       "version": "3.3.0",
@@ -2463,7 +2453,6 @@
       "version": "2.0.2",
       "resolved": "https://registry.npmjs.org/define-property/-/define-property-2.0.2.tgz",
       "integrity": "sha512-jwK2UV4cnPpbcG7+VRARKTZPUWowwXA8bzH5NP6ud0oeAxyYPuGZUAC7hMugpCdz4BeSZl2Dl9k66CHJ/46ZYQ==",
-      "dev": true,
       "requires": {
         "is-descriptor": "^1.0.2",
         "isobject": "^3.0.1"
@@ -2473,7 +2462,6 @@
           "version": "1.0.0",
           "resolved": "https://registry.npmjs.org/is-accessor-descriptor/-/is-accessor-descriptor-1.0.0.tgz",
           "integrity": "sha512-m5hnHTkcVsPfqx3AKlyttIPb7J+XykHvJP2B9bZDjlhLIoEq4XoK64Vg7boZlVWYK6LUY94dYPEE7Lh0ZkZKcQ==",
-          "dev": true,
           "requires": {
             "kind-of": "^6.0.0"
           }
@@ -2482,7 +2470,6 @@
           "version": "1.0.0",
           "resolved": "https://registry.npmjs.org/is-data-descriptor/-/is-data-descriptor-1.0.0.tgz",
           "integrity": "sha512-jbRXy1FmtAoCjQkVmIVYwuuqDFUbaOeDjmed1tOGPrsMhtJA4rD9tkgA0F1qJ3gRFRXcHYVkdeaP50Q5rE/jLQ==",
-          "dev": true,
           "requires": {
             "kind-of": "^6.0.0"
           }
@@ -2491,7 +2478,6 @@
           "version": "1.0.2",
           "resolved": "https://registry.npmjs.org/is-descriptor/-/is-descriptor-1.0.2.tgz",
           "integrity": "sha512-2eis5WqQGV7peooDyLmNEPUrps9+SXX5c9pL3xEB+4e9HnGuDa7mB7kHxHw4CbqS9k1T2hOH3miL8n8WtiYVtg==",
-          "dev": true,
           "requires": {
             "is-accessor-descriptor": "^1.0.0",
             "is-data-descriptor": "^1.0.0",
@@ -2501,14 +2487,12 @@
         "isobject": {
           "version": "3.0.1",
           "resolved": "https://registry.npmjs.org/isobject/-/isobject-3.0.1.tgz",
-          "integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8=",
-          "dev": true
+          "integrity": "sha1-TkMekrEalzFjaqH5yNHMvP2reN8="
         },
         "kind-of": {
           "version": "6.0.2",
           "resolved": "https://registry.npmjs.org/kind-of/-/kind-of-6.0.2.tgz",
-          "integrity": "sha512-s5kLOcnH0XqDO+FvuaLX8DDjZ18CGFk7VygH40QoKPUQhW4e2rvM0rwUq0t8IQDOwYSeLK01U90OjzBTme2QqA==",
-          "dev": true
+          "integrity": "sha512-s5kLOcnH0XqDO+FvuaLX8DDjZ18CGFk7VygH40QoKPUQhW4e2rvM0rwUq0t8IQDOwYSeLK01U90OjzBTme2QqA=="
         }
       }
     },
@@ -2543,6 +2527,11 @@
       "integrity": "sha1-CIZXpmqWHAUBnbfEIwiDsca0F24=",
       "dev": true
     },
+    "detect-file": {
+      "version": "1.0.0",
+      "resolved": "https://registry.npmjs.org/detect-file/-/detect-file-1.0.0.tgz",
+      "integrity": "sha1-8NZtA2cqglyxtzvbP+YjEMjlUrc="
+    },
     "detect-indent": {
       "version": "4.0.0",
       "resolved": "https://registry.npmjs.org/detect-indent/-/detect-indent-4.0.0.tgz",
@@ -2954,7 +2943,6 @@
       "version": "2.0.2",
       "resolved": "https://registry.npmjs.org/expand-tilde/-/expand-tilde-2.0.2.tgz",
       "integrity": "sha1-l+gBqgUt8CRU3kawK/YhZCzchQI=",
-      "dev": true,
       "requires": {
         "homedir-polyfill": "^1.0.1"
       }
@@ -3072,11 +3060,15 @@
       "resolved": "https://registry.npmjs.org/express-json/-/express-json-1.0.0.tgz",
       "integrity": "sha1-n91TI5rQpvPgdvVFhdiiJDB1+zY="
     },
+    "extend": {
+      "version": "3.0.1",
+      "resolved": "https://registry.npmjs.org/extend/-/extend-3.0.1.tgz",
+      "integrity": "sha1-p1Xqe8Gt/MWjHOfnYtuq3F5jZEQ="
+    },
     "extend-shallow": {
       "version": "3.0.2",
       "resolved": "https://registry.npmjs.org/extend-shallow/-/extend-shallow-3.0.2.tgz",
       "integrity": "sha1-Jqcarwc7OfshJxcnRhMcJwQCjbg=",
-      "dev": true,
       "requires": {
         "assign-symbols": "^1.0.0",
         "is-extendable": "^1.0.1"
@@ -3086,7 +3078,6 @@
           "version": "1.0.1",
           "resolved": "https://registry.npmjs.org/is-extendable/-/is-extendable-1.0.1.tgz",
           "integrity": "sha512-arnXMxT1hhoKo9k1LZdmlNyJdDDfy2v0fXjFlmok4+i8ul/6WlbVge9bhM74OpNPQPMGUToDtz+KXa1PneJxOA==",
-          "dev": true,
           "requires": {
             "is-plain-object": "^2.0.4"
           }
@@ -3547,6 +3538,292 @@
         "locate-path": "^2.0.0"
       }
     },
+    "findup-sync": {
+      "version": "2.0.0",
+      "resolved": "https://registry.npmjs.org/findup-sync/-/findup-sync-2.0.0.tgz",
+      "integrity": "sha1-kyaxSIwi0aYIhlCoaQGy2akKLLw=",
+      "requires": {
+        "detect-file": "^1.0.0",
+        "is-glob": "^3.1.0",
+        "micromatch": "^3.0.4",
+        "resolve-dir": "^1.0.1"
+      },
+      "dependencies": {
+        "arr-diff": {
+          "version": "4.0.0",
+          "resolved": "https://registry.npmjs.org/arr-diff/-/arr-diff-4.0.0.tgz",
+          "integrity": "sha1-1kYQdP6/7HHn4VI1dhoyml3HxSA="
+        },
+        "array-unique": {
+          "version": "0.3.2",
+          "resolved": "https://registry.npmjs.org/array-unique/-/array-unique-0.3.2.tgz",
+          "integrity": "sha1-qJS3XUvE9s1nnvMkSp/Y9Gri1Cg="
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       }
     },
@@ -9454,7 +9866,6 @@
       "version": "1.3.0",
       "resolved": "https://registry.npmjs.org/which/-/which-1.3.0.tgz",
       "integrity": "sha512-xcJpopdamTuY5duC/KnTTNBraPK54YwpenP4lzxU8H91GudWpFv38u0CKjclE1Wi2EH2EDz5LRcHcKbCIzqGyg==",
-      "dev": true,
       "requires": {
         "isexe": "^2.0.0"
       }
diff --git a/package.json b/package.json
index eaeb208..79ab7c3 100644
--- a/package.json
+++ b/package.json
@@ -29,6 +29,7 @@
     "express": "^4.16.3",
     "express-json": "^1.0.0",
     "file-saver": "^1.3.8",
+    "knex": "^0.14.6",
     "knox": "^0.9.2",
     "moment": "^2.22.1",
     "multer": "^1.3.0",