import re import os import gzip import glob import json import click import math import string from util import * PDF_DIR = 'datasets/s2/pdf' @click.command() def s2_pdf_report(): rows = [] empty_papers = [] no_separator_papers = [] geocoded_papers = [] unknown_papers = [] found_count = 0 total_count = 0 addresses = AddressBook() for fn in glob.iglob('{}/**/*.txt'.format(PDF_DIR), recursive=True): paper_id = fn.replace(PDF_DIR, '').split('/')[2] total_count += 1 # print(paper_id) headings, found_abstract = read_headings(fn) heading_string = '\n'.join(headings[0:20]) found_addresses = [] if not found_abstract: if len(headings) == 0: empty_papers.append(paper.record()) continue if len(headings) > 20: no_separator_papers.append(paper.record()) # continue for heading in headings: l = heading.lower().strip() address = addresses.find(l) if address: found_addresses.append(address) # MAYBE try checking the entire string against everything? # if not len(found_addresses): # l = heading_string.lower().strip() # address = addresses.find(l) # if address: # found_addresses.append(address) if len(found_addresses): found_count += 1 for address in found_addresses: geocoded_papers.append([paper.paper_id, paper.title] + address) else: unknown_papers.append([paper.paper_id, paper.title, heading_string]) write_csv('reports/stats/empty_papers.csv', keys=None, rows=empty_papers) write_csv('reports/stats/no_separator_papers.csv', keys=None, rows=no_separator_papers) write_csv('reports/stats/geocoded_papers.csv', keys=None, rows=geocoded_papers) write_csv('reports/stats/unknown_papers.csv', keys=None, rows=unknown_papers) print("{} {} ({}%)".format('empty', len(empty_papers), percent(len(empty_papers), total_count))) print("{} {} ({}%)".format('no separator', len(no_separator_papers), percent(len(no_separator_papers), total_count))) print("{} {} ({}%)".format('found', found_count, percent(found_count, total_count))) print("{} {} ({}%)".format('unknown', len(unknown_papers), percent(len(unknown_papers), total_count))) print("{} {} entities".format('geocoded', len(geocoded_papers))) def percent(a,b): return round(100 * a / b) def paper_path(paper_id): return '{}/{}/{}'.format(PDF_DIR, paper_id[0:2], paper_id) if __name__ == '__main__': s2_pdf_report()