1 files changed, 0 insertions, 102 deletions
diff --git a/s2-pdf-report.py b/s2-pdf-report.py
deleted file mode 100644
index d3e117f1..00000000
--- a/s2-pdf-report.py
+++ /dev/null
@@ -1,102 +0,0 @@
-import re
-import os
-import gzip
-import glob
-import json
-import click
-import math
-import string
-# import nltk
-from collections import Counter
-from util import *
-
-PDF_DIR = 'datasets/s2/pdf'
-punctuation = re.compile(r'[-.?!,":;()|0-9]')
-
-@click.command()
-def s2_pdf_report():
-  rows = []
-  empty_papers = []
-  no_separator_papers = []
-  geocoded_papers = []
-  unknown_papers = []
-  unknown_terms = Counter()
-  unknown_bigrams = Counter()
-  unknown_trigrams = Counter()
-  found_count = 0
-  total_count = 0
-  addresses = AddressBook()
-  for fn in glob.iglob('{}/**/*.txt'.format(PDF_DIR), recursive=True):
-    paper_id = fn.replace(PDF_DIR, '').split('/')[2]
-    paper = load_paper(paper_id)
-    total_count += 1
-    # print(paper_id)
-    headings, found_abstract = read_headings(fn, paper)
-    heading_string = '\n'.join(headings[0:20])
-    found_addresses = []
-    if not found_abstract:
-      if len(headings) == 0:
-        empty_papers.append(paper.record())
-        continue
-      if len(headings) > 20:
-        no_separator_papers.append(paper.record())
-        # continue
-    for heading in headings:
-      l = heading.lower().strip()
-      address = addresses.find(l)
-      if address:
-        found_addresses.append(address)
-    if not address:
-      for heading in headings:
-        l = heading.lower().strip()
-        l = re.sub('[^a-zA-Z]+', ' ', l)
-        l = re.sub('\s+', ' ', l)
-        terms = l.strip().split(' ')
-        last_term = None
-        penultimate_term = None
-        for term in terms:
-          if len(term) > 1 and term != 'cid':
-            if len(term) > 2:
-              unknown_terms[term] += 1
-              if last_term:
-                unknown_bigrams[last_term + ' ' + term] += 1
-              if penultimate_term:
-                unknown_trigrams[penultimate_term + ' ' + last_term + ' ' + term] += 1
-            penultimate_term = last_term
-            last_term = term
-
-    # MAYBE try checking the entire string against everything?
-    # if not len(found_addresses):
-    #   l = heading_string.lower().strip()
-    #   address = addresses.find(l)
-    #   if address:
-    #     found_addresses.append(address)
-
-    if len(found_addresses):
-      found_count += 1
-      for address in found_addresses:
-        geocoded_papers.append([paper.paper_id, paper.title] + address)
-    else:
-      unknown_papers.append([paper.paper_id, paper.title, heading_string])
-
-  write_report('reports/pdf_unknown_terms.html', title='PDF Report: Unknown Terms', keys=None, rows=unknown_terms.most_common(1000))
-  write_report('reports/pdf_unknown_bigrams.html', title='PDF Report: Unknown Bigrams', keys=None, rows=unknown_bigrams.most_common(1000))
-  write_report('reports/pdf_unknown_trigram.html', title='PDF Report: Unknown Trigrams', keys=None, rows=unknown_trigrams.most_common(1000))
-  write_csv('reports/stats/empty_papers.csv', keys=None, rows=empty_papers)
-  write_csv('reports/stats/no_separator_papers.csv', keys=None, rows=no_separator_papers)
-  write_csv('reports/stats/geocoded_papers.csv', keys=None, rows=geocoded_papers)
-  write_csv('reports/stats/unknown_papers.csv', keys=None, rows=unknown_papers)
-  print("{} {} ({}%)".format('empty', len(empty_papers), percent(len(empty_papers), total_count)))
-  print("{} {} ({}%)".format('no separator', len(no_separator_papers), percent(len(no_separator_papers), total_count)))
-  print("{} {} ({}%)".format('found', found_count, percent(found_count, total_count)))
-  print("{} {} ({}%)".format('unknown', len(unknown_papers), percent(len(unknown_papers), total_count)))
-  print("{} {} entities".format('geocoded', len(geocoded_papers)))
-
-def percent(a,b):
-  return round(100 * a / b)
-
-def paper_path(paper_id):
-  return '{}/{}/{}'.format(PDF_DIR, paper_id[0:2], paper_id)
-  
-if __name__ == '__main__':
-  s2_pdf_report()